Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hybrid sensor histidine kinase/response regulator | DXC16_07990 | Not Available | Negative | 1744486 - 1748772 | 162869.0 |
| l-rhamnose mutarotase | DXC16_07995 | Not Available | Negative | 1748853 - 1749167 | 12242.6 |
| glycoside hydrolase family 88 protein | DXC16_08000 | Not Available | Negative | 1749205 - 1750620 | 53275.8 |
| rhamnogalacturonan lyase | DXC16_08005 | Not Available | Negative | 1750633 - 1752540 | 70820.6 |
| glycoside hydrolase family 28 protein | DXC16_08010 | Not Available | Negative | 1752537 - 1753925 | 52063.7 |
| hypothetical protein | DXC16_08015 | Not Available | Negative | 1753989 - 1756340 | 89513.1 |
| hypothetical protein | DXC16_08020 | Not Available | Negative | 1756599 - 1758716 | 80941.6 |
| hypothetical protein | DXC16_08025 | Not Available | Negative | 1758772 - 1761012 | 84250.7 |
| pectate lyase | DXC16_08030 | Not Available | Negative | 1761021 - 1762529 | 57108.4 |
| ragb/susd family nutrient uptake outer membrane protein | DXC16_08035 | Not Available | Negative | 1762622 - 1764499 | 70190.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

