Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deaminase | DXC16_07615 | Not Available | Negative | 1654996 - 1655418 | 16029.4 |
| sigma-54-dependent fis family transcriptional regulator | DXC16_07620 | Not Available | Negative | 1655698 - 1657014 | 49438.8 |
| response regulator | DXC16_07625 | Not Available | Negative | 1657011 - 1659350 | 88374.8 |
| dna-binding protein | DXC16_07630 | Not Available | Negative | 1659438 - 1659914 | 17202.0 |
| tolc family protein | DXC16_07635 | Not Available | Negative | 1660086 - 1661453 | 49891.2 |
| hydrophobe/amphiphile efflux-1 family rnd transporter | DXC16_07640 | Not Available | Negative | 1661450 - 1664641 | 115360.0 |
| efflux rnd transporter periplasmic adaptor subunit | DXC16_07645 | Not Available | Negative | 1664660 - 1665757 | 39816.3 |
| tetracycline resistance ribosomal protection protein tet(q) | DXC16_07655 | Not Available | Negative | 1667469 - 1669394 | 72226.1 |
| dna methylase | DXC16_07660 | Not Available | Negative | 1670052 - 1675868 | 219860.0 |
| duf1896 domain-containing protein | DXC16_07665 | Not Available | Negative | 1675858 - 1676445 | 22268.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

