Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1573 domain-containing protein | DXC16_06940 | Not Available | Negative | 1495407 - 1496483 | 39188.1 |
| hypothetical protein | DXC16_06945 | Not Available | Positive | 1496614 - 1497045 | 17003.8 |
| alpha-2-macroglobulin | DXC16_06950 | Not Available | Negative | 1497106 - 1502784 | 213500.0 |
| transcriptional regulator | DXC16_06960 | Not Available | Negative | 1503272 - 1503487 | 7860.67 |
| nucleoside deaminase | DXC16_06970 | Not Available | Positive | 1504400 - 1504867 | 16967.2 |
| aminoacyl-histidine dipeptidase | DXC16_06975 | Not Available | Negative | 1504929 - 1506389 | 53173.6 |
| upf0104 family protein | DXC16_06980 | Not Available | Negative | 1506386 - 1507390 | 37225.6 |
| 16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsma | DXC16_06985 | Not Available | Positive | 1507489 - 1508331 | 31909.8 |
| magnesium transporter | DXC16_06990 | Not Available | Positive | 1508363 - 1509703 | 49694.8 |
| duf349 domain-containing protein | DXC16_06995 | Not Available | Positive | 1509964 - 1511772 | 70097.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

