Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh:ubiquinone reductase (na(+)-transporting) subunit f | DXC16_05895 | Not Available | Positive | 1268013 - 1269287 | 47059.9 |
| atp-dependent helicase | DXC16_05900 | Not Available | Positive | 1269378 - 1270697 | 49651.0 |
| 3-phosphoserine/phosphohydroxythreonine transaminase | DXC16_05905 | Not Available | Positive | 1270952 - 1272022 | 39485.6 |
| 3-phosphoglycerate dehydrogenase | DXC16_05910 | Not Available | Positive | 1272130 - 1273050 | 33087.2 |
| duf1015 domain-containing protein | DXC16_05915 | Not Available | Positive | 1273159 - 1274406 | 47087.9 |
| dmt family transporter | DXC16_05920 | Not Available | Positive | 1274643 - 1275557 | 32976.2 |
| beta-n-acetylhexosaminidase | DXC16_05925 | Not Available | Positive | 1275603 - 1277924 | 87149.4 |
| rna-binding protein | DXC16_05930 | Not Available | Negative | 1278108 - 1278353 | 9169.97 |
| ferredoxin | DXC16_05935 | Not Available | Positive | 1278647 - 1279177 | 19120.2 |
| cof-type had-iib family hydrolase | DXC16_05940 | Not Available | Negative | 1279167 - 1279973 | 30316.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

