Phocaeicola vulgatus strain OM08-13BH

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain OM08-13BH is a Gram-positive, rod-shaped anaerobic bacterium that is typically found in host-associated environments. This strain exhibits a single-cell arrangement, which is characteristic of its genus. As an anaerobe, P. vulgatus strain OM08-13BH thrives in environments devoid of oxygen, suggesting its adaptation to the anaerobic conditions often present within the gastrointestinal tracts of various hosts. The host-associated habitat of P. vulgatus indicates its potential role in symbiotic relationships, likely contributing to the microbial community dynamics within its specific ecological niche. While the precise ecological interactions of this strain remain to be fully elucidated, its presence in host-associated habitats may imply its involvement in processes such as nutrient metabolism or maintenance of gut homeostasis. The isolation of this strain underscores the significance of anaerobic bacteria in the microbiome and their potential contributions to the overall health and function of their host organisms. Further investigation into the metabolic capabilities and interactions of P. vulgatus strain OM08-13BH could provide insights into its role within complex microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain OM08-13BH
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain OM08-13BH

Accession NumberQSTG00000000.1

Gene Summary

Adenine Count

1637192 bp

Thymine Count

1621139 bp

Guanine Count

1179841 bp

Cytosine Count

1218260 bp

Genome Length

5657833 bp

Protein-coding Genes

4696 genes

Non-Coding Genes

141 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+88403 - 88416Not Available
IntegraseDXC16_00410Not Available-88469 - 8969247207.4
Trna-other;Not AvailableNot Available+89047 - 89132Not Available
hypothetical proteinDXC16_00415Not Available+89852 - 900437404.41
hypothetical proteinDXC16_00420Not Available+90089 - 9037610694.7
Trna-ser;Not AvailableNot Available+90340 - 90427Not Available
hypothetical proteinDXC16_00425Not Available+90446 - 9083514293.1
hypothetical proteinDXC16_00430Not Available+90961 - 9133213596.4
hypothetical proteinDXC16_00435Not Available-91411 - 9170410814.1
Trna-glu;Not AvailableNot Available+91455 - 91529Not Available

Displaying genes 1 – 10 of 4837 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites