Bacteroides stercoris strain TF03-6

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides stercoris strain TF03-6 is a Gram-negative, anaerobic rod bacterium that primarily inhabits the feces and gut of Homo sapiens. This organism is part of the diverse gut microbiota, contributing to the complex ecosystem of microorganisms residing in the human gastrointestinal tract. One notable characteristic of B. stercoris TF03-6 is the presence of flagella, which may facilitate its movement within the gut environment. The strain is characterized by having a single replicon, indicating a relatively streamlined genomic structure. This feature may play a role in its adaptability and survival within the competitive gut microbiome. The anaerobic nature of B. stercoris TF03-6 suggests it thrives in oxygen-depleted environments, a common condition in the gut where the majority of microbial life is adapted to such conditions. The ecological role of Bacteroides species, including B. stercoris, often involves the breakdown of complex carbohydrates and the fermentation of dietary fibers, producing short-chain fatty acids that can benefit host health. Understanding the specific traits and behaviors of B. stercoris TF03-6 can provide insights into its contribution to human gut health and its potential implications in maintaining a balanced microbiota. The characterization of this strain contributes to the broader knowledge of gut microbiome dynamics and the importance of microbial diversity in human health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides stercoris
Strainstrain TF03-6

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bacteroides stercoris strain TF03-6
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatfeces; gut; gut microbiota
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides stercoris strain TF03-6 TF03-6.Scaf61, whole genome

Gene Summary

Adenine Count

1167055 bp

Thymine Count

1151426 bp

Guanine Count

964155 bp

Cytosine Count

987505 bp

Genome Length

4270503 bp

Protein-coding Genes

3520 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transglutaminase domain-containing proteinDXC34_04790Not AvailablePositive1260331 - 126166551709.2
pdz domain-containing proteinDXC34_04795Not AvailablePositive1261989 - 126351854198.1
rna polymerase sigma factor rpod/sigaDXC34_04800Not AvailablePositive1263710 - 126457032775.3
hypothetical proteinDXC34_04805Not AvailablePositive1264682 - 126507415112.5
peptidase c11DXC34_04810Not AvailablePositive1265105 - 126630145154.0
pyridine nucleotide-disulfide oxidoreductaseDXC34_04815Not AvailablePositive1266568 - 126902488599.7
marr family transcriptional regulatorDXC34_04820Not AvailablePositive1269033 - 126938012939.9
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhDXC34_04825Not AvailableNegative1269395 - 126986818170.4
duf4783 domain-containing proteinDXC34_04830Not AvailablePositive1269981 - 127037314653.6
carboxylating nicotinate-nucleotide diphosphorylaseDXC34_04835Not AvailablePositive1270366 - 127121431250.2

Displaying genes 951 – 960 of 3581 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Enteric malnutritionCausesPMC8542975

Displaying health effects 1 – 1 of 1 in total