Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fimbrillin family protein | DXC44_04900 | Not Available | Negative | 1186999 - 1188108 | 40877.8 |
| duf5119 domain-containing protein | DXC44_04905 | Not Available | Negative | 1188152 - 1189072 | 34229.2 |
| duf3575 domain-containing protein | DXC44_04910 | Not Available | Negative | 1189069 - 1190289 | 46570.5 |
| luxr family transcriptional regulator | DXC44_04915 | Not Available | Positive | 1190594 - 1191652 | 40822.4 |
| hypothetical protein | DXC44_04920 | Not Available | Negative | 1191941 - 1192534 | 23187.6 |
| hypothetical protein | DXC44_04925 | Not Available | Negative | 1192527 - 1192733 | 7959.65 |
| hypothetical protein | DXC44_04930 | Not Available | Negative | 1192756 - 1193055 | 11590.3 |
| hypothetical protein | DXC44_04935 | Not Available | Negative | 1193198 - 1193719 | 19390.2 |
| hypothetical protein | DXC44_04940 | Not Available | Negative | 1193688 - 1194047 | 13301.6 |
| 3'-5' exonuclease | DXC44_04945 | Not Available | Negative | 1194044 - 1194811 | 28654.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

