Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_04800 | Not Available | Positive | 1159802 - 1160740 | 36759.2 |
| legumain | DXC44_04805 | Not Available | Negative | 1161029 - 1163158 | 79278.9 |
| bmp family abc transporter substrate-binding protein | DXC44_04810 | Not Available | Negative | 1163139 - 1164158 | 38226.0 |
| hypothetical protein | DXC44_04815 | Not Available | Negative | 1164160 - 1164708 | 20563.4 |
| is982 family transposase | DXC44_04820 | Not Available | Positive | 1164768 - 1165748 | 37559.4 |
| hypothetical protein | DXC44_04825 | Not Available | Positive | 1165832 - 1166284 | 18076.5 |
| hypothetical protein | DXC44_04830 | Not Available | Positive | 1166281 - 1167108 | 32307.4 |
| duf2625 family protein | DXC44_04835 | Not Available | Positive | 1167196 - 1167837 | 24580.6 |
| duf4253 domain-containing protein | DXC44_04840 | Not Available | Positive | 1168108 - 1173723 | 215754.0 |
| duf4261 domain-containing protein | DXC44_04845 | Not Available | Positive | 1173755 - 1174630 | 33232.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

