Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-ketoacyl-[acyl-carrier-protein] synthase ii | DXC44_04700 | Not Available | Negative | 1138769 - 1140034 | 44835.9 |
| acyl carrier protein | DXC44_04705 | Not Available | Negative | 1140053 - 1140289 | 8382.75 |
| phosphoribosylglycinamide formyltransferase | DXC44_04710 | Not Available | Positive | 1140442 - 1141020 | 21358.0 |
| rna polymerase sigma-70 factor | DXC44_04715 | Not Available | Negative | 1140992 - 1141537 | 21413.0 |
| susc/raga family tonb-linked outer membrane protein | DXC44_04720 | Not Available | Positive | 1141858 - 1144899 | 112174.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DXC44_04725 | Not Available | Positive | 1144899 - 1146602 | 63029.3 |
| hypothetical protein | DXC44_04730 | Not Available | Positive | 1146931 - 1147110 | 6531.03 |
| hypothetical protein | DXC44_04735 | Not Available | Positive | 1147354 - 1147645 | 10522.9 |
| hypothetical protein | DXC44_04740 | Not Available | Negative | 1147973 - 1149427 | 56545.6 |
| hypothetical protein | DXC44_04745 | Not Available | Negative | 1150551 - 1150925 | 14031.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

