Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_04650 | Not Available | Negative | 1118995 - 1120500 | 57485.0 |
| 6-phosphofructokinase | DXC44_04655 | Not Available | Positive | 1120648 - 1121658 | 35787.3 |
| hybrid sensor histidine kinase/response regulator | DXC44_04660 | Not Available | Negative | 1121668 - 1125741 | 154835.0 |
| tonb-dependent receptor | DXC44_04665 | Not Available | Positive | 1125926 - 1129180 | 121287.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_04670 | Not Available | Positive | 1129201 - 1131114 | 73429.1 |
| duf229 domain-containing protein | DXC44_04675 | Not Available | Positive | 1131216 - 1132652 | 55139.6 |
| glycoside hydrolase family 29 | DXC44_04680 | Not Available | Positive | 1132656 - 1134041 | 52730.6 |
| glycoside hydrolase family 36 | DXC44_04685 | Not Available | Positive | 1134048 - 1136123 | 78657.9 |
| sulfatase | DXC44_04690 | Not Available | Positive | 1136142 - 1137695 | 57886.7 |
| ribonuclease iii | DXC44_04695 | Not Available | Negative | 1137840 - 1138766 | 35224.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

