Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4221 domain-containing protein | DXC44_04595 | Not Available | Positive | 1101202 - 1102386 | 46211.0 |
| duf2062 domain-containing protein | DXC44_04600 | Not Available | Positive | 1102508 - 1103701 | 44775.9 |
| methyltransferase domain-containing protein | DXC44_04605 | Not Available | Positive | 1103694 - 1107548 | 146322.0 |
| nad(p)/fad-dependent oxidoreductase | DXC44_04610 | Not Available | Positive | 1107541 - 1109031 | 56620.9 |
| choloylglycine hydrolase | DXC44_04615 | Not Available | Positive | 1109024 - 1110688 | 63163.4 |
| hypothetical protein | DXC44_04625 | Not Available | Positive | 1112037 - 1112612 | 21488.1 |
| pas domain-containing protein | DXC44_04630 | Not Available | Negative | 1112730 - 1115153 | 92935.8 |
| hypothetical protein | DXC44_04635 | Not Available | Positive | 1115352 - 1116173 | 30751.9 |
| duf3108 domain-containing protein | DXC44_04640 | Not Available | Negative | 1116262 - 1117071 | 31356.0 |
| hypothetical protein | DXC44_04645 | Not Available | Negative | 1117068 - 1118990 | 73369.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

