Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arabinan endo-1,5-alpha-l-arabinosidase | DXC44_04495 | Not Available | Positive | 1082050 - 1083933 | 70238.0 |
| cysteine--trna ligase | DXC44_04500 | Not Available | Positive | 1084308 - 1085789 | 56272.0 |
| aromatic amino acid lyase | DXC44_04505 | Not Available | Positive | 1085977 - 1087548 | 59097.5 |
| 3-oxoacyl-acp reductase fabg | DXC44_04510 | Not Available | Positive | 1087545 - 1088273 | 26411.8 |
| beta-ketoacyl-[acyl-carrier-protein] synthase family protein | DXC44_04515 | Not Available | Positive | 1088281 - 1089510 | 44242.6 |
| acyl carrier protein | DXC44_04520 | Not Available | Positive | 1089532 - 1089783 | 9584.45 |
| acyltransferase | DXC44_04525 | Not Available | Positive | 1089783 - 1090667 | 34490.0 |
| methyltransferase domain-containing protein | DXC44_04530 | Not Available | Positive | 1090681 - 1091751 | 40576.6 |
| hydroxymyristoyl-acp dehydratase | DXC44_04535 | Not Available | Positive | 1091748 - 1092185 | 16452.2 |
| acyl-coa thioesterase | DXC44_04540 | Not Available | Positive | 1092182 - 1092625 | 17306.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

