Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein | DXC44_04445 | Not Available | Positive | 1060600 - 1061070 | 18252.8 |
| trna 2-thiouridine(34) synthase mnma | DXC44_04450 | Not Available | Positive | 1061073 - 1062128 | 40157.7 |
| arylsulfatase | DXC44_04455 | Not Available | Positive | 1062276 - 1063838 | 57638.2 |
| alpha-l-arabinofuranosidase | DXC44_04460 | Not Available | Negative | 1064640 - 1066619 | 75354.2 |
| arabinan endo-1,5-alpha-l-arabinosidase | DXC44_04465 | Not Available | Negative | 1066643 - 1068178 | 57814.3 |
| response regulator | DXC44_04470 | Not Available | Positive | 1068466 - 1072692 | 161336.0 |
| glycoside hydrolase family 97 protein | DXC44_04475 | Not Available | Positive | 1072825 - 1074753 | 72947.5 |
| tonb-dependent receptor | DXC44_04480 | Not Available | Positive | 1075193 - 1078402 | 118845.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_04485 | Not Available | Positive | 1078422 - 1080173 | 66225.7 |
| hypothetical protein | DXC44_04490 | Not Available | Positive | 1080198 - 1081976 | 64403.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

