Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain TF05-18
Accession NumberQSSN00000000.1
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf4982 domain-containing protein | DXC44_00285 | Not Available | + | 86271 - 89249 | 113660.0 |
| glucuronyl hydrolase | DXC44_00290 | Not Available | + | 89305 - 90495 | 45495.7 |
| duf2264 domain-containing protein | DXC44_00295 | Not Available | + | 90485 - 91714 | 46619.4 |
| aldehyde dehydrogenase | DXC44_00300 | Not Available | + | 92130 - 93566 | 52581.3 |
| glycoside hydrolase family 88 protein | DXC44_00305 | Not Available | - | 93773 - 95179 | 53514.8 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_00310 | Not Available | - | 95245 - 97251 | 74841.6 |
| tonb-dependent receptor | DXC44_00315 | Not Available | - | 97269 - 100439 | 118016.0 |
| hybrid sensor histidine kinase/response regulator | DXC44_00320 | Not Available | + | 100694 - 104971 | 163395.0 |
| arabinosidase | DXC44_00325 | Not Available | + | 105086 - 106090 | 38217.7 |
| duf4038 domain-containing protein | DXC44_00330 | Not Available | + | 106160 - 107623 | 55585.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
