Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine c-acetyltransferase | DXC44_04395 | Not Available | Negative | 1044818 - 1046008 | 43568.4 |
| nad-dependent epimerase/dehydratase family protein | DXC44_04400 | Not Available | Positive | 1046179 - 1047132 | 35269.3 |
| sugar kinase | DXC44_04405 | Not Available | Positive | 1047280 - 1048344 | 38944.4 |
| protein translocase subunit secdf | DXC44_04410 | Not Available | Negative | 1048609 - 1051596 | 109234.0 |
| m3 family peptidase | DXC44_04415 | Not Available | Negative | 1051775 - 1053862 | 79074.5 |
| endonuclease | DXC44_04420 | Not Available | Negative | 1053889 - 1054968 | 40377.0 |
| rhomboid family intramembrane serine protease | DXC44_04425 | Not Available | Negative | 1054972 - 1055865 | 33974.6 |
| rhomboid family intramembrane serine protease | DXC44_04430 | Not Available | Negative | 1055846 - 1056523 | 25332.5 |
| hu family dna-binding protein | DXC44_04435 | Not Available | Positive | 1056734 - 1057006 | 9278.25 |
| duf4981 domain-containing protein | DXC44_04440 | Not Available | Positive | 1057099 - 1060428 | 125940.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

