Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DXC44_04295 | Not Available | Positive | 1023314 - 1025119 | 70240.4 |
| nad/nadp octopine/nopaline dehydrogenase | DXC44_04300 | Not Available | Positive | 1025116 - 1026216 | 41186.0 |
| licd family protein | DXC44_04305 | Not Available | Positive | 1026220 - 1027017 | 31729.4 |
| hemolysin activation protein | DXC44_04310 | Not Available | Positive | 1027031 - 1028047 | 40398.4 |
| glycosyltransferase | DXC44_04315 | Not Available | Positive | 1028020 - 1029135 | 42944.4 |
| glycosyltransferase | DXC44_04320 | Not Available | Positive | 1029148 - 1030410 | 47669.5 |
| glycosyltransferase | DXC44_04325 | Not Available | Positive | 1030403 - 1031149 | 28692.4 |
| hypothetical protein | DXC44_04330 | Not Available | Negative | 1031175 - 1033667 | 93062.5 |
| 5'-methylthioadenosine/adenosylhomocysteine nucleosidase | DXC44_04335 | Not Available | Positive | 1033752 - 1034447 | 25510.5 |
| s-ribosylhomocysteine lyase | DXC44_04340 | Not Available | Positive | 1034459 - 1034944 | 18487.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

