Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyruvate kinase | DXC44_04245 | Not Available | Negative | 1009822 - 1011285 | 54241.6 |
| type ii 3-dehydroquinate dehydratase | DXC44_04250 | Not Available | Negative | 1011318 - 1011740 | 15666.9 |
| site-specific tyrosine recombinase xerd | DXC44_04255 | Not Available | Positive | 1011807 - 1012748 | 36180.1 |
| tetratricopeptide repeat protein | DXC44_04260 | Not Available | Positive | 1012890 - 1014566 | 60821.8 |
| duf4369 domain-containing protein | DXC44_04265 | Not Available | Positive | 1014720 - 1015787 | 40431.1 |
| atp-binding protein | DXC44_04270 | Not Available | Positive | 1015792 - 1017330 | 56320.0 |
| methionine--trna ligase | DXC44_04275 | Not Available | Positive | 1017786 - 1019828 | 77707.9 |
| lipopolysaccharide biosynthesis protein | DXC44_04280 | Not Available | Positive | 1019910 - 1021346 | 53599.5 |
| acyltransferase | DXC44_04285 | Not Available | Positive | 1021346 - 1022371 | 39504.4 |
| glycosyl transferase | DXC44_04290 | Not Available | Negative | 1022394 - 1023224 | 31834.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

