Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_04195 | Not Available | Positive | 999334 - 1000731 | 52324.1 |
| isoprenyl transferase | DXC44_04200 | Not Available | Positive | 1000765 - 1001496 | 28066.4 |
| outer membrane protein assembly factor bama | DXC44_04205 | Not Available | Positive | 1001508 - 1004150 | 100747.0 |
| omph family outer membrane protein | DXC44_04210 | Not Available | Positive | 1004171 - 1004686 | 18967.6 |
| omph family outer membrane protein | DXC44_04215 | Not Available | Positive | 1004744 - 1005247 | 19260.2 |
| glutamate racemase | DXC44_04220 | Not Available | Positive | 1005350 - 1006195 | 31392.0 |
| pyridoxamine kinase | DXC44_04225 | Not Available | Positive | 1006252 - 1007124 | 32647.3 |
| abc transporter permease | DXC44_04230 | Not Available | Negative | 1007511 - 1008749 | 45708.0 |
| 30s ribosome-binding factor rbfa | DXC44_04235 | Not Available | Negative | 1008759 - 1009094 | 12972.9 |
| methyltransferase | DXC44_04240 | Not Available | Negative | 1009168 - 1009806 | 24383.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

