Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-leu | Not Available | Not Available | Positive | 992252 - 992339 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 992356 - 992428 | Not Available |
| l-glyceraldehyde 3-phosphate reductase | DXC44_04155 | Not Available | Negative | 992499 - 993491 | 36702.9 |
| argininosuccinate lyase | DXC44_04160 | Not Available | Negative | 993515 - 994855 | 50645.4 |
| srpbcc family protein | DXC44_04165 | Not Available | Negative | 994870 - 995274 | 15197.6 |
| orotate phosphoribosyltransferase | DXC44_04170 | Not Available | Negative | 995372 - 996010 | 23412.4 |
| comf family protein | DXC44_04175 | Not Available | Negative | 996110 - 996805 | 26096.9 |
| recx family transcriptional regulator | DXC44_04180 | Not Available | Negative | 996786 - 997271 | 18941.9 |
| peptide chain release factor n(5)-glutamine methyltransferase | DXC44_04185 | Not Available | Negative | 997273 - 998109 | 31868.4 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | DXC44_04190 | Not Available | Positive | 998154 - 999206 | 39640.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

