Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| esterase | DXC44_04095 | Not Available | Positive | 973680 - 974837 | 44351.1 |
| glycosyl hydrolase family 35 | DXC44_04100 | Not Available | Negative | 975078 - 977438 | 89168.5 |
| glycoside hydrolase family 2 | DXC44_04105 | Not Available | Negative | 977443 - 980262 | 107539.0 |
| duf5107 domain-containing protein | DXC44_04110 | Not Available | Negative | 980280 - 983576 | 126453.0 |
| mfs transporter | DXC44_04115 | Not Available | Negative | 983613 - 984998 | 50400.7 |
| arac family transcriptional regulator | DXC44_04120 | Not Available | Positive | 985165 - 986052 | 34315.2 |
| pepsy domain-containing protein | DXC44_04125 | Not Available | Negative | 986066 - 987238 | 44218.1 |
| duf4374 domain-containing protein | DXC44_04130 | Not Available | Negative | 987255 - 988655 | 51082.5 |
| tonb-dependent receptor | DXC44_04135 | Not Available | Negative | 988713 - 991013 | 86518.3 |
| dna-3-methyladenine glycosylase i | DXC44_04140 | Not Available | Positive | 991324 - 991902 | 22222.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

