Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peroxiredoxin | DXC44_04045 | Not Available | Negative | 954171 - 954737 | 21139.2 |
| magnesium transporter cora family protein | DXC44_04050 | Not Available | Positive | 955244 - 956167 | 35616.4 |
| hypothetical protein | DXC44_04055 | Not Available | Negative | 956438 - 958948 | 96241.8 |
| susc/raga family tonb-linked outer membrane protein | DXC44_04060 | Not Available | Positive | 959271 - 962348 | 113646.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_04065 | Not Available | Positive | 962367 - 963977 | 61585.3 |
| duf3237 family protein | DXC44_04070 | Not Available | Negative | 964083 - 964481 | 14357.2 |
| alpha/beta fold hydrolase | DXC44_04075 | Not Available | Negative | 964478 - 965302 | 30135.6 |
| hypothetical protein | DXC44_04080 | Not Available | Positive | 965487 - 967355 | 69715.3 |
| hybrid sensor histidine kinase/response regulator | DXC44_04085 | Not Available | Negative | 967624 - 971487 | 147555.0 |
| hypothetical protein | DXC44_04090 | Not Available | Positive | 971549 - 973663 | 80306.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

