Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-asn | Not Available | Not Available | Positive | 937054 - 937127 | Not Available |
| Trna-asn | Not Available | Not Available | Positive | 937153 - 937226 | Not Available |
| hybrid sensor histidine kinase/response regulator | DXC44_04005 | Not Available | Negative | 937582 - 941622 | 153020.0 |
| hypothetical protein | DXC44_04010 | Not Available | Positive | 941836 - 943335 | 56182.5 |
| tonb-dependent receptor | DXC44_04015 | Not Available | Positive | 943358 - 946396 | 112401.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_04020 | Not Available | Positive | 946414 - 948072 | 63057.9 |
| beta-glycosidase | DXC44_04025 | Not Available | Positive | 948189 - 949787 | 59499.4 |
| xylanase | DXC44_04030 | Not Available | Positive | 949800 - 951365 | 59560.3 |
| laci family transcriptional regulator | DXC44_04035 | Not Available | Negative | 951446 - 952468 | 38256.6 |
| alkyl hydroperoxide reductase subunit f | DXC44_04040 | Not Available | Negative | 952608 - 954158 | 55936.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

