Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain TF05-18
Accession NumberQSSN00000000.1
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein | DXC44_00235 | Not Available | - | 67979 - 68659 | 25998.1 |
| helicase | DXC44_00240 | Not Available | + | 68988 - 70385 | 53118.1 |
| duf1573 domain-containing protein | DXC44_00245 | Not Available | + | 70510 - 70779 | 10061.0 |
| rna polymerase sigma-70 factor | DXC44_00250 | Not Available | + | 70874 - 71461 | 22864.5 |
| duf4974 domain-containing protein | DXC44_00255 | Not Available | + | 71580 - 72524 | 35899.4 |
| susc/raga family tonb-linked outer membrane protein | DXC44_00260 | Not Available | + | 72679 - 76227 | 131028.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_00265 | Not Available | + | 76241 - 78292 | 77928.2 |
| glycoside hydrolase family 2 | DXC44_00270 | Not Available | + | 78506 - 80983 | 93481.9 |
| glycoside hydrolase | DXC44_00275 | Not Available | + | 80994 - 83210 | 84104.6 |
| helix-turn-helix domain-containing protein | DXC44_00280 | Not Available | + | 83363 - 86149 | 106085.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
