Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific integrase | DXC44_03540 | Not Available | Negative | 841251 - 842234 | 38299.4 |
| hypothetical protein | DXC44_03545 | Not Available | Negative | 842276 - 843223 | 35988.7 |
| hypothetical protein | DXC44_03550 | Not Available | Negative | 843247 - 844785 | 55506.4 |
| duf3868 domain-containing protein | DXC44_03555 | Not Available | Negative | 844816 - 846225 | 54418.8 |
| duf3575 domain-containing protein | DXC44_03560 | Not Available | Negative | 846232 - 846804 | 21549.8 |
| duf3868 domain-containing protein | DXC44_03565 | Not Available | Negative | 846808 - 847902 | 40126.8 |
| duf3575 domain-containing protein | DXC44_03570 | Not Available | Negative | 847931 - 848497 | 21301.5 |
| site-specific integrase | DXC44_03575 | Not Available | Negative | 848845 - 849774 | 35816.5 |
| hypothetical protein | DXC44_03580 | Not Available | Positive | 850057 - 852675 | 98502.2 |
| hypothetical protein | DXC44_03585 | Not Available | Negative | 852681 - 853295 | 23675.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

