Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleotide sugar dehydrogenase | DXC44_03490 | Not Available | Negative | 829174 - 830424 | 47360.9 |
| upxy family transcription antiterminator | DXC44_03495 | Not Available | Negative | 830835 - 831335 | 18979.7 |
| hypothetical protein | DXC44_03500 | Not Available | Positive | 831613 - 831810 | 7987.94 |
| duf3987 domain-containing protein | DXC44_03505 | Not Available | Positive | 832009 - 834387 | 90046.5 |
| duf4248 domain-containing protein | DXC44_03510 | Not Available | Negative | 834538 - 834768 | 8949.8 |
| dna-binding protein | DXC44_03515 | Not Available | Positive | 835017 - 835445 | 15564.9 |
| n-acetylmuramoyl-l-alanine amidase | DXC44_03520 | Not Available | Positive | 835586 - 836035 | 16921.3 |
| tyrosine protein kinase | DXC44_03525 | Not Available | Negative | 836144 - 838555 | 90138.3 |
| polysaccharide export protein | DXC44_03530 | Not Available | Negative | 838564 - 839361 | 29224.7 |
| undecaprenyl-phosphate glucose phosphotransferase | DXC44_03535 | Not Available | Negative | 839401 - 840804 | 54566.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

