Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain TF05-18
Accession NumberQSSN00000000.1
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| beta-galactosidase | DXC44_00180 | Not Available | - | 48852 - 51740 | 109000.0 |
| glycoside hydrolase family 28 protein | DXC44_00185 | Not Available | - | 52017 - 53801 | 66004.3 |
| hypothetical protein | DXC44_00190 | Not Available | + | 54014 - 54709 | 26643.0 |
| fic family protein | DXC44_00195 | Not Available | - | 54900 - 55901 | 38217.1 |
| glycosyl hydrolase family 43 | DXC44_00205 | Not Available | - | 57648 - 58970 | 49754.7 |
| arylsulfatase | DXC44_00210 | Not Available | - | 59370 - 60785 | 53041.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_00215 | Not Available | - | 60803 - 62428 | 61315.7 |
| susc/raga family tonb-linked outer membrane protein | DXC44_00220 | Not Available | - | 62441 - 65806 | 124295.0 |
| fecr family protein | DXC44_00225 | Not Available | - | 66061 - 67074 | 38561.1 |
| rna polymerase sigma-70 factor | DXC44_00230 | Not Available | + | 67220 - 67786 | 22201.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
