Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 88 protein | DXC44_03390 | Not Available | Positive | 801635 - 802834 | 45371.1 |
| duf4038 domain-containing protein | DXC44_03395 | Not Available | Positive | 802985 - 804454 | 56335.3 |
| alpha-rhamnosidase | DXC44_03400 | Not Available | Positive | 804460 - 808434 | 149783.0 |
| glycoside hydrolase family 127 protein | DXC44_03405 | Not Available | Positive | 808662 - 810767 | 78760.8 |
| right-handed parallel beta-helix repeat-containing protein | DXC44_03410 | Not Available | Positive | 810792 - 812615 | 68576.0 |
| alpha-rhamnosidase | DXC44_03415 | Not Available | Positive | 812630 - 814774 | 82009.8 |
| hypothetical protein | DXC44_03420 | Not Available | Negative | 814937 - 815365 | 16939.3 |
| mannose-1-phosphate guanylyltransferase | DXC44_03425 | Not Available | Negative | 815369 - 816412 | 39443.6 |
| gdp-l-fucose synthase | DXC44_03430 | Not Available | Negative | 816427 - 817509 | 40975.2 |
| gdp-mannose 4,6-dehydratase | DXC44_03435 | Not Available | Negative | 817530 - 818609 | 40992.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

