Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s41 family peptidase | DXC44_03290 | Not Available | Negative | 781119 - 782867 | 64897.7 |
| cmp deaminase | DXC44_03295 | Not Available | Negative | 782882 - 783316 | 16211.4 |
| duf4847 domain-containing protein | DXC44_03300 | Not Available | Negative | 783321 - 783815 | 18544.7 |
| m3 family peptidase | DXC44_03305 | Not Available | Negative | 783829 - 785871 | 77809.2 |
| crp/fnr family transcriptional regulator | DXC44_03310 | Not Available | Negative | 786029 - 786706 | 26004.6 |
| marc family protein | DXC44_03315 | Not Available | Positive | 786895 - 787497 | 22140.0 |
| fad:protein fmn transferase | DXC44_03320 | Not Available | Negative | 787656 - 788672 | 37820.5 |
| manganese efflux pump | DXC44_03325 | Not Available | Negative | 788686 - 789258 | 21225.7 |
| hypothetical protein | DXC44_03330 | Not Available | Negative | 789262 - 789963 | 26539.9 |
| hypothetical protein | DXC44_03335 | Not Available | Negative | 789911 - 790459 | 20757.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

