Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_03240 | Not Available | Negative | 774147 - 775121 | 38672.1 |
| hypothetical protein | DXC44_03245 | Not Available | Negative | 775133 - 775990 | 33381.4 |
| site-specific integrase | DXC44_03250 | Not Available | Negative | 776061 - 777275 | 46700.6 |
| Trna-gly | Not Available | Not Available | Positive | 777392 - 777464 | Not Available |
| Trna-tyr | Not Available | Not Available | Positive | 777471 - 777556 | Not Available |
| 6,7-dimethyl-8-ribityllumazine synthase | DXC44_03265 | Not Available | Negative | 777668 - 778174 | 18128.7 |
| hypothetical protein | DXC44_03270 | Not Available | Negative | 778267 - 778944 | 24504.2 |
| dna replication/repair protein recf | DXC44_03275 | Not Available | Positive | 779097 - 780212 | 42967.7 |
| duf721 domain-containing protein | DXC44_03280 | Not Available | Positive | 780209 - 780499 | 11221.9 |
| 5-formyltetrahydrofolate cyclo-ligase | DXC44_03285 | Not Available | Negative | 780665 - 781195 | 20467.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

