Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| upf0104 family protein | DXC44_03085 | Not Available | Positive | 746995 - 747996 | 37585.2 |
| had family hydrolase | DXC44_03090 | Not Available | Positive | 748001 - 748723 | 27106.8 |
| sugar mfs transporter | DXC44_03095 | Not Available | Positive | 748730 - 749929 | 44345.3 |
| ribokinase | DXC44_03100 | Not Available | Negative | 749984 - 750880 | 33171.6 |
| inositol-3-phosphate synthase | DXC44_03105 | Not Available | Positive | 751016 - 752323 | 48823.8 |
| sigma-54-dependent fis family transcriptional regulator | DXC44_03110 | Not Available | Positive | 752490 - 753755 | 46861.1 |
| hypothetical protein | DXC44_03115 | Not Available | Positive | 753742 - 754269 | 19738.6 |
| tetratricopeptide repeat protein | DXC44_03120 | Not Available | Positive | 754286 - 755038 | 29436.1 |
| preprotein translocase subunit secg | DXC44_03125 | Not Available | Positive | 755044 - 755409 | 12571.2 |
| exodeoxyribonuclease iii | DXC44_03130 | Not Available | Positive | 755573 - 756328 | 29696.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

