Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s1 | DXC44_02975 | Not Available | Negative | 725475 - 727271 | 67091.1 |
| hypothetical protein | DXC44_02980 | Not Available | Positive | 727468 - 727707 | 9421.54 |
| simpl domain-containing protein | DXC44_02985 | Not Available | Negative | 727797 - 728498 | 26268.6 |
| n-acetylmuramic acid 6-phosphate etherase | DXC44_02990 | Not Available | Negative | 728502 - 729338 | 30403.9 |
| atpase | DXC44_02995 | Not Available | Negative | 729335 - 730174 | 30757.1 |
| dna-binding response regulator | DXC44_03000 | Not Available | Negative | 730330 - 731115 | 30198.5 |
| histidine kinase | DXC44_03005 | Not Available | Negative | 731108 - 732151 | 40167.1 |
| duf4136 domain-containing protein | DXC44_03015 | Not Available | Negative | 732919 - 733551 | 24210.4 |
| duf4251 domain-containing protein | DXC44_03020 | Not Available | Negative | 733577 - 734134 | 20164.2 |
| duf4251 domain-containing protein | DXC44_03025 | Not Available | Negative | 734368 - 734922 | 20105.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

