Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_02925 | Not Available | Positive | 712788 - 713228 | 16227.5 |
| valine--trna ligase | DXC44_02930 | Not Available | Negative | 713409 - 716036 | 99731.5 |
| nucleoside triphosphate pyrophosphohydrolase | DXC44_02935 | Not Available | Positive | 716144 - 716932 | 30729.6 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_02940 | Not Available | Negative | 717126 - 718856 | 65760.8 |
| tonb-dependent receptor | DXC44_02945 | Not Available | Negative | 718880 - 722041 | 117828.0 |
| hypothetical protein | DXC44_02950 | Not Available | Negative | 722314 - 722760 | 17649.5 |
| hypothetical protein | DXC44_02955 | Not Available | Negative | 722772 - 723149 | 14624.4 |
| rna polymerase sigma factor | DXC44_02960 | Not Available | Negative | 723194 - 723745 | 21616.8 |
| ribonuclease z | DXC44_02965 | Not Available | Negative | 723779 - 724708 | 35255.8 |
| cold shock domain-containing protein | DXC44_02970 | Not Available | Negative | 724779 - 725225 | 17045.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

