Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain TF05-18
Accession NumberQSSN00000000.1
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nadh-quinone oxidoreductase subunit b | DXC44_00130 | Not Available | - | 36955 - 37551 | 22081.9 |
| nadh-quinone oxidoreductase subunit a | DXC44_00135 | Not Available | - | 37542 - 37892 | 13099.5 |
| hypothetical protein | DXC44_00140 | Not Available | - | 37996 - 38373 | 14644.8 |
| trkh family potassium uptake protein | DXC44_00145 | Not Available | - | 38476 - 39930 | 53448.3 |
| trk system potassium transporter trka | DXC44_00150 | Not Available | - | 39930 - 41270 | 49307.5 |
| 1-deoxy-d-xylulose-5-phosphate synthase | DXC44_00155 | Not Available | - | 41283 - 43181 | 70224.9 |
| gscfa domain protein | DXC44_00160 | Not Available | + | 43274 - 44260 | 38641.5 |
| bifunctional udp-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase/alanine racemase | DXC44_00165 | Not Available | + | 44236 - 46701 | 92784.0 |
| duf4858 domain-containing protein | DXC44_00170 | Not Available | + | 46791 - 47354 | 21541.2 |
| exopolygalacturonase | DXC44_00175 | Not Available | - | 47506 - 48810 | 49100.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
