Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat protein | DXC44_02875 | Not Available | Negative | 700305 - 701660 | 50268.8 |
| hypothetical protein | DXC44_02880 | Not Available | Negative | 701707 - 703023 | 49230.1 |
| type iii pantothenate kinase | DXC44_02885 | Not Available | Negative | 703010 - 703738 | 26911.9 |
| duf4105 domain-containing protein | DXC44_02890 | Not Available | Positive | 703865 - 705040 | 45036.3 |
| alkaline phosphatase family protein | DXC44_02895 | Not Available | Positive | 705037 - 706620 | 59458.8 |
| protein translocase subunit seca | DXC44_02900 | Not Available | Positive | 706716 - 710012 | 125159.0 |
| hypothetical protein | DXC44_02905 | Not Available | Positive | 710135 - 711127 | 37676.2 |
| hypothetical protein | DXC44_02910 | Not Available | Positive | 711198 - 711647 | 17049.0 |
| hypothetical protein | DXC44_02915 | Not Available | Negative | 711722 - 712099 | 14902.8 |
| sigma-70 family rna polymerase sigma factor | DXC44_02920 | Not Available | Negative | 712096 - 712641 | 21010.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

