Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | DXC44_02775 | Not Available | Negative | 674381 - 675325 | 35902.1 |
| phoh family protein | DXC44_02780 | Not Available | Negative | 675346 - 676350 | 37733.4 |
| hypothetical protein | DXC44_02785 | Not Available | Positive | 676508 - 677182 | 24792.2 |
| trna pseudouridine(38-40) synthase trua | DXC44_02790 | Not Available | Positive | 677187 - 677990 | 30885.8 |
| dna metabolism protein | DXC44_02795 | Not Available | Negative | 677956 - 678723 | 30630.9 |
| putative dna modification/repair radical sam protein | DXC44_02800 | Not Available | Negative | 678720 - 679988 | 48564.8 |
| tlpa family protein disulfide reductase | DXC44_02805 | Not Available | Positive | 680345 - 681685 | 51223.8 |
| susc/raga family tonb-linked outer membrane protein | DXC44_02810 | Not Available | Positive | 681715 - 684996 | 123205.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_02815 | Not Available | Positive | 685009 - 686451 | 54912.8 |
| peptidylprolyl isomerase | DXC44_02820 | Not Available | Negative | 686599 - 687177 | 21017.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

