Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_02725 | Not Available | Positive | 666141 - 666464 | 11739.5 |
| ytxh domain-containing protein | DXC44_02730 | Not Available | Positive | 666670 - 666918 | 9308.13 |
| nitroreductase family protein | DXC44_02735 | Not Available | Negative | 667006 - 667635 | 23181.1 |
| dipeptidase | DXC44_02740 | Not Available | Negative | 667648 - 669000 | 49852.0 |
| chorismate synthase | DXC44_02745 | Not Available | Negative | 669014 - 670090 | 39168.8 |
| lema family protein | DXC44_02750 | Not Available | Negative | 670299 - 670880 | 21752.9 |
| tpm domain-containing protein | DXC44_02755 | Not Available | Negative | 670917 - 671837 | 33360.1 |
| alpha/beta hydrolase | DXC44_02760 | Not Available | Negative | 671834 - 672784 | 36584.3 |
| shikimate dehydrogenase | DXC44_02765 | Not Available | Negative | 672792 - 673532 | 27732.7 |
| demethylmenaquinone methyltransferase | DXC44_02770 | Not Available | Negative | 673551 - 674288 | 27936.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

