Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_02420 | Not Available | Negative | 606479 - 607522 | 41669.3 |
| duf1016 family protein | DXC44_02425 | Not Available | Negative | 607531 - 608826 | 49049.6 |
| site-specific integrase | DXC44_02430 | Not Available | Negative | 608890 - 610173 | 50235.1 |
| hypothetical protein | DXC44_02435 | Not Available | Negative | 610735 - 610947 | 8579.56 |
| ph domain-containing protein | DXC44_02440 | Not Available | Negative | 611067 - 611510 | 16664.8 |
| hypothetical protein | DXC44_02445 | Not Available | Negative | 611679 - 612113 | 16911.9 |
| crp/fnr family transcriptional regulator | DXC44_02455 | Not Available | Positive | 612643 - 613206 | 22255.1 |
| acyltransferase | DXC44_02460 | Not Available | Positive | 613324 - 614475 | 43081.8 |
| transcriptional repressor | DXC44_02465 | Not Available | Negative | 614648 - 615073 | 16193.7 |
| heavy metal translocating p-type atpase | DXC44_02470 | Not Available | Negative | 615087 - 616805 | 62529.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

