Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trpb-like pyridoxal phosphate-dependent enzyme | DXC44_02310 | Not Available | Negative | 578236 - 579600 | 50212.2 |
| trka family potassium uptake protein | DXC44_02320 | Not Available | Positive | 581625 - 582311 | 25637.0 |
| duf4738 domain-containing protein | DXC44_02325 | Not Available | Positive | 582526 - 583095 | 21153.6 |
| hypothetical protein | DXC44_02330 | Not Available | Positive | 583188 - 583628 | 16654.3 |
| l-serine ammonia-lyase | DXC44_02335 | Not Available | Negative | 583808 - 585016 | 43967.2 |
| metallophosphatase | DXC44_02340 | Not Available | Negative | 585166 - 586329 | 44619.9 |
| hypothetical protein | DXC44_02345 | Not Available | Negative | 586373 - 588058 | 62592.9 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_02350 | Not Available | Negative | 588170 - 589684 | 56866.3 |
| susc/raga family tonb-linked outer membrane protein | DXC44_02355 | Not Available | Negative | 589703 - 593092 | 126869.0 |
| fecr family protein | DXC44_02360 | Not Available | Negative | 593108 - 594277 | 44543.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

