Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| clc family h(+)/cl(-) exchange transporter | DXC44_02260 | Not Available | Positive | 562419 - 564017 | 59620.1 |
| diacylglucosamine hydrolase | DXC44_02265 | Not Available | Positive | 564027 - 564617 | 22791.2 |
| arac family transcriptional regulator | DXC44_02270 | Not Available | Positive | 564614 - 566431 | 70592.4 |
| susc/raga family tonb-linked outer membrane protein | DXC44_02275 | Not Available | Positive | 566624 - 569875 | 121652.0 |
| starch-binding protein | DXC44_02280 | Not Available | Positive | 569887 - 571308 | 53335.2 |
| ahpc/tsa family protein | DXC44_02285 | Not Available | Positive | 571327 - 572508 | 43766.7 |
| Trna-glu | Not Available | Not Available | Positive | 572686 - 572760 | Not Available |
| hypothetical protein | DXC44_02295 | Not Available | Positive | 572903 - 574192 | 48095.4 |
| deoxyribonuclease iv | DXC44_02300 | Not Available | Positive | 574235 - 575071 | 31411.4 |
| marr family transcriptional regulator | DXC44_02305 | Not Available | Negative | 575546 - 577618 | 78440.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

