Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-succinylbenzoate synthase | DXC44_02210 | Not Available | Negative | 550411 - 551466 | 39880.0 |
| mmcq/yjbr family dna-binding protein | DXC44_02215 | Not Available | Negative | 551445 - 551828 | 14976.9 |
| 1,4-dihydroxy-2-naphthoyl-coa synthase | DXC44_02220 | Not Available | Negative | 551849 - 552670 | 30339.4 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | DXC44_02225 | Not Available | Negative | 552670 - 554343 | 62974.1 |
| isochorismate synthase | DXC44_02230 | Not Available | Negative | 554370 - 555512 | 43212.4 |
| hotdog fold thioesterase | DXC44_02235 | Not Available | Negative | 555509 - 555916 | 14518.5 |
| slc13 family permease | DXC44_02240 | Not Available | Positive | 556105 - 557967 | 67164.1 |
| mate family efflux transporter | DXC44_02245 | Not Available | Negative | 557930 - 559285 | 49655.3 |
| pyridine nucleotide-disulfide oxidoreductase | DXC44_02250 | Not Available | Positive | 559522 - 562023 | 90744.7 |
| marr family transcriptional regulator | DXC44_02255 | Not Available | Positive | 562057 - 562386 | 12226.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

