Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase | DXC44_02160 | Not Available | Negative | 540438 - 540956 | 19703.7 |
| dna-binding protein | DXC44_02165 | Not Available | Negative | 541267 - 541806 | 19230.7 |
| duf4248 domain-containing protein | DXC44_02170 | Not Available | Negative | 542089 - 542313 | 8370.25 |
| duf3987 domain-containing protein | DXC44_02175 | Not Available | Negative | 542331 - 544274 | 71616.3 |
| virulence protein e | DXC44_02180 | Not Available | Negative | 544278 - 544847 | 21603.9 |
| hypothetical protein | DXC44_02185 | Not Available | Positive | 545033 - 545500 | 16988.2 |
| dead/deah box helicase | DXC44_02190 | Not Available | Positive | 545556 - 547835 | 86454.2 |
| duf4250 domain-containing protein | DXC44_02195 | Not Available | Positive | 547950 - 548126 | 6921.42 |
| arac family transcriptional regulator | DXC44_02200 | Not Available | Negative | 548189 - 549073 | 34283.2 |
| o-succinylbenzoic acid--coa ligase | DXC44_02205 | Not Available | Negative | 549329 - 550414 | 40590.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

