Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide export protein | DXC44_02060 | Not Available | Positive | 518781 - 519581 | 29352.7 |
| tyrosine protein kinase | DXC44_02065 | Not Available | Positive | 519619 - 522030 | 89860.9 |
| sdr family oxidoreductase | DXC44_02070 | Not Available | Positive | 522450 - 523316 | 30909.7 |
| lipopolysaccharide biosynthesis protein | DXC44_02075 | Not Available | Positive | 523326 - 524864 | 58119.8 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase | DXC44_02080 | Not Available | Positive | 524868 - 526604 | 65412.3 |
| polysaccharide pyruvyl transferase family protein | DXC44_02085 | Not Available | Positive | 526669 - 527826 | 44317.1 |
| o-antigen ligase domain-containing protein | DXC44_02090 | Not Available | Positive | 527940 - 529190 | 48397.2 |
| glycosyl hydrolase | DXC44_02095 | Not Available | Positive | 529168 - 530259 | 44068.3 |
| glycosyltransferase family 2 protein | DXC44_02100 | Not Available | Positive | 530263 - 531192 | 35914.2 |
| glycosyltransferase | DXC44_02105 | Not Available | Positive | 531204 - 532127 | 36116.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

