Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_21875 | Not Available | Positive | 5051738 - 5052065 | 12590.8 |
| kila-n domain-containing protein | DXC44_21880 | Not Available | Positive | 5052032 - 5052835 | 30754.0 |
| duf4133 domain-containing protein | DXC44_21895 | Not Available | Positive | 5053892 - 5054224 | 12566.7 |
| duf3875 domain-containing protein | DXC44_21900 | Not Available | Positive | 5054221 - 5054411 | 7143.71 |
| acetyl-coa carboxylase biotin carboxylase subunit | DXC44_21905 | Not Available | Negative | 5054412 - 5054890 | 18653.6 |
| acetyl-coa carboxylase biotin carboxylase subunit | DXC44_21910 | Not Available | Negative | 5054901 - 5055423 | 20063.1 |
| is982 family transposase | DXC44_21915 | Not Available | Negative | 5055424 - 5056275 | 33172.0 |
| is982-like element is1187 family transposase | DXC44_21925 | Not Available | Negative | 5057259 - 5057992 | 28221.9 |
| para family protein | DXC44_21930 | Not Available | Positive | 5058135 - 5058794 | 24897.1 |
| duf3408 domain-containing protein | DXC44_21935 | Not Available | Positive | 5058800 - 5058993 | 7166.27 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

