Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is66 family insertion sequence hypothetical protein | DXC44_21815 | Not Available | Negative | 5043299 - 5043649 | 13608.7 |
| hypothetical protein | DXC44_21820 | Not Available | Negative | 5043637 - 5044041 | 14911.8 |
| trag family conjugative transposon atpase | DXC44_21825 | Not Available | Positive | 5044060 - 5045462 | 53966.3 |
| conjugal transfer protein trag | DXC44_21830 | Not Available | Positive | 5045473 - 5045827 | 13332.8 |
| duf3408 domain-containing protein | DXC44_21840 | Not Available | Positive | 5046302 - 5046693 | 14607.2 |
| plasmid mobilization relaxosome protein mobc | DXC44_21845 | Not Available | Positive | 5046922 - 5047293 | 13847.0 |
| hypothetical protein | DXC44_21850 | Not Available | Positive | 5047298 - 5047509 | 7703.44 |
| mobilization protein | DXC44_21855 | Not Available | Positive | 5047591 - 5048207 | 23412.4 |
| hypothetical protein | DXC44_21860 | Not Available | Negative | 5048208 - 5049207 | 35716.6 |
| fimbrillin family protein | DXC44_21865 | Not Available | Negative | 5049419 - 5050019 | 21720.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

