Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin-dependent thiol peroxidase | DXC44_02005 | Not Available | Negative | 505989 - 506435 | 16910.4 |
| saccharopine dehydrogenase family protein | DXC44_02010 | Not Available | Negative | 506503 - 507696 | 44966.5 |
| hypothetical protein | DXC44_02015 | Not Available | Negative | 507780 - 509033 | 47788.1 |
| meta domain-containing protein | DXC44_02020 | Not Available | Positive | 509158 - 509949 | 28686.0 |
| molecular chaperone dnak | DXC44_02025 | Not Available | Positive | 510278 - 512194 | 68358.2 |
| haloacid dehalogenase | DXC44_02030 | Not Available | Positive | 512294 - 513400 | 42660.8 |
| aaa family atpase | DXC44_02040 | Not Available | Negative | 514161 - 515942 | 67421.4 |
| site-specific integrase | DXC44_02045 | Not Available | Positive | 516422 - 517357 | 36310.9 |
| upxy family transcription antiterminator | DXC44_02050 | Not Available | Positive | 517653 - 518303 | 24605.0 |
| hypothetical protein | DXC44_02055 | Not Available | Positive | 518321 - 518755 | 16620.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

