Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is66 family insertion sequence hypothetical protein | DXC44_21710 | Not Available | Positive | 5031062 - 5031427 | 14167.3 |
| is66-like element isbf10 family transposase | DXC44_21715 | Not Available | Positive | 5031503 - 5033176 | 65051.0 |
| hypothetical protein | DXC44_21720 | Not Available | Positive | 5033252 - 5033419 | 6430.67 |
| hypothetical protein | DXC44_21725 | Not Available | Positive | 5033634 - 5033819 | 6783.26 |
| hypothetical protein | DXC44_21730 | Not Available | Positive | 5033792 - 5034232 | 16260.8 |
| sigma-70 family rna polymerase sigma factor | DXC44_21735 | Not Available | Negative | 5034394 - 5034514 | 4335.3 |
| sigma-70 family rna polymerase sigma factor | DXC44_21745 | Not Available | Negative | 5034701 - 5034972 | 10501.7 |
| pcfk-like protein | DXC44_21750 | Not Available | Positive | 5034973 - 5035194 | 8520.99 |
| pcfj-like protein | DXC44_21755 | Not Available | Positive | 5035191 - 5036456 | 48776.0 |
| hypothetical protein | DXC44_21760 | Not Available | Positive | 5036481 - 5036738 | 10375.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

