Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_21605 | Not Available | Positive | 5014496 - 5016043 | 59922.6 |
| hypothetical protein | DXC44_21610 | Not Available | Positive | 5016056 - 5017108 | 39144.5 |
| conjugative transposon protein trak | DXC44_21620 | Not Available | Positive | 5017362 - 5017670 | 11674.7 |
| duf3989 domain-containing protein | DXC44_21625 | Not Available | Positive | 5017677 - 5017985 | 11768.5 |
| conjugative transposon protein tram | DXC44_21630 | Not Available | Positive | 5017966 - 5019390 | 51403.7 |
| duf4138 domain-containing protein | DXC44_21635 | Not Available | Positive | 5019460 - 5019968 | 18530.9 |
| conjugative transposon protein tran | DXC44_21640 | Not Available | Positive | 5019979 - 5020819 | 31968.7 |
| conjugal transfer protein trao | DXC44_21645 | Not Available | Positive | 5020822 - 5021397 | 21053.4 |
| dna primase | DXC44_21650 | Not Available | Positive | 5021406 - 5022305 | 33701.4 |
| duf3872 domain-containing protein | DXC44_21655 | Not Available | Positive | 5022305 - 5022811 | 19367.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

