Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate-5-semialdehyde dehydrogenase | DXC44_21555 | Not Available | Negative | 5002389 - 5003642 | 45493.7 |
| glutamate 5-kinase | DXC44_21560 | Not Available | Negative | 5003680 - 5004762 | 39536.0 |
| cof-type had-iib family hydrolase | DXC44_21565 | Not Available | Positive | 5004921 - 5005703 | 28780.6 |
| glycoside hydrolase family 92 protein | DXC44_21570 | Not Available | Positive | 5005907 - 5008099 | 82154.1 |
| atp-binding protein | DXC44_21575 | Not Available | Positive | 5008416 - 5009546 | 43799.0 |
| hypothetical protein | DXC44_21580 | Not Available | Positive | 5009568 - 5010209 | 24677.2 |
| hypothetical protein | DXC44_21585 | Not Available | Positive | 5010578 - 5012455 | 72374.5 |
| duf3244 domain-containing protein | DXC44_21590 | Not Available | Positive | 5012638 - 5013009 | 14228.2 |
| hypothetical protein | DXC44_21595 | Not Available | Positive | 5013021 - 5013593 | 22589.2 |
| hemolysin | DXC44_21600 | Not Available | Positive | 5013623 - 5014483 | 32446.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

