Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugal transfer protein trao | DXC44_21500 | Not Available | Negative | 4993629 - 4994204 | 21130.4 |
| conjugative transposon protein tran | DXC44_21505 | Not Available | Negative | 4994207 - 4994932 | 28062.3 |
| group ii intron reverse transcriptase/maturase | DXC44_21510 | Not Available | Negative | 4994904 - 4996715 | 70189.3 |
| duf4138 domain-containing protein | DXC44_21520 | Not Available | Negative | 4997256 - 4997681 | 15433.5 |
| conjugative transposon protein tram | DXC44_21525 | Not Available | Negative | 4997736 - 4999160 | 51424.7 |
| duf3989 domain-containing protein | DXC44_21530 | Not Available | Negative | 4999141 - 4999449 | 11800.5 |
| conjugative transposon protein trak | DXC44_21535 | Not Available | Negative | 4999455 - 5000078 | 24030.7 |
| conjugative transposon protein traj | DXC44_21540 | Not Available | Negative | 5000110 - 5001114 | 37153.8 |
| conjugal transfer protein trai | DXC44_21545 | Not Available | Negative | 5001118 - 5001349 | 9181.15 |
| acetylornithine carbamoyltransferase | DXC44_21550 | Not Available | Negative | 5001404 - 5002369 | 36475.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

