Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_21425 | Not Available | Positive | 4975861 - 4976514 | 24453.8 |
| hypothetical protein | DXC44_21430 | Not Available | Negative | 4976796 - 4977452 | 25590.4 |
| glpgli family protein | DXC44_21455 | Not Available | Negative | 4981113 - 4982819 | 63526.1 |
| dna-binding protein | DXC44_21460 | Not Available | Negative | 4982898 - 4983536 | 24089.6 |
| hypothetical protein | DXC44_21465 | Not Available | Positive | 4983538 - 4983744 | 7958.76 |
| virulence-associated protein e | DXC44_21470 | Not Available | Positive | 4983850 - 4985001 | 45227.5 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DXC44_21480 | Not Available | Positive | 4988803 - 4990662 | 70276.5 |
| aaa family atpase | DXC44_21485 | Not Available | Positive | 4990989 - 4992182 | 45849.4 |
| duf3872 domain-containing protein | DXC44_21490 | Not Available | Negative | 4992330 - 4992730 | 15266.3 |
| dna primase | DXC44_21495 | Not Available | Negative | 4992749 - 4993621 | 32593.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

